Uppsala Multidisciplinary Center for Advanced Computational Science

[bio] Installations for Irma

2016-06-21

Various bio packages installed for Irma, either by linking to packages on Milou or local compilation.

  • abyss/1.3.5

  • compiled locally as k-mer=64 (default) and 96 ("-max")

  • allpaths-lg/52485
    • compiled locally
  • BUSCO/1.1b1
    • delayed due to configuration issues
  • bwa/0.7.4
    • newer versions also available on Irma
  • cabog/8.1
    • also installed 8.3
  • MaSuRCA/2.3.2
  • picard/1.92
    • newer versions also available on Irma
  • soapdenovo/2.04-r240
  • spades/3.6.0
    • also installed 3.6.1
  • trimmomatic/0.32
  • trinity/2014-07-17  (legacy)
    • compiled locally

 /wesleys