Uppsala Multidisciplinary Center for Advanced Computational Science

UPPNEX Publication List

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Ahmed E, Hugerth L, Logue J, Brüchert V, Andersson A, Holmström S - Mineral Type Structures Soil Microbial Communities, Geomicrobiology Journal, (2016), -, -, 1-8

Ali Z, Klar J, Jameel M, Fatima A, Raininko R, Baig S, Dahl N - Novel SACS mutations associated with intellectual disability, epilepsy and widespread supratentorial abnormalities, Journal of the Neurological Sciences, (2016), 371, -, 105-111

Almén M, Lamichhaney S, Berglund J, Grant B, Grant P, Webster M, Andersson L - Adaptive radiation of Darwin's finches revisited using whole genome sequencing, BioEssays, (2016), 38, 1, 14-20

Asplund-Samuelsson J, Sundh J, Dupont C, Allen A, McCrow J, Celepli N, Bergman B, Ininbergs K, Ekman M - Diversity and Expression of Bacterial Metacaspases in an Aquatic Ecosystem, Frontiers in Microbiology, (2016), 7, -, -

Baltar F, Lundin D, Palovaara J, Lekunberri I, Reinthaler T, Herndl G, Pinhassi J - Prokaryotic Responses to Ammonium and Organic Carbon Reveal Alternative CO2 Fixation Pathways and Importance of Alkaline Phosphatase in the Mesopelagic North Atlantic, Frontiers in Microbiology, (2016), 7, -, -

Bergfors A, Bergqvist A, Ameur A, Lennerstrand J - Analysis of hepatitis C NS5A resistance associated polymorphisms using ultra deep single molecule real time (SMRT) sequencing, Antiviral Research, (2016), 126, -, 81-89

Berggren O, Rönnblom L, Eloranta M - Effect of PTPN22 Gene Variant R620W on Type I Interferon Production Stimulated by Different Toll-like Receptor 7 Agonists: Comment on the Article by Wang et al, Arthritis & Rheumatology, (2016), 68, 4, 1045-1045

Bergmann A, Castellano G, Alten J, Ammerpohl O, Kolarova J, Nordlund J, Martin-Subero J, Schrappe M, Siebert R - DNA methylation profiling of pediatric B-cell lymphoblastic leukemia with KMT2A rearrangement identifies hypomethylation at enhancer sites, Pediatric Blood & Cancer, (2016), -, -, -

Bertos-Fortis M, Farnelid H, Lindh M, Casini M, Andersson A, Pinhassi J, Legrand C - Unscrambling Cyanobacteria Community Dynamics Related to Environmental Factors, Frontiers in Microbiology, (2016), 7, -, -

Bianchi M, Landegren N, Nordin J, Dalin F, Mathioudaki A, Eriksson G, Hultin-Rosenberg L, Dahlqvist J, Zetterqvist H, Karlsson Å, Hallgren Å, Farias F, Murén E, Ahlgren K, Lobell A, Andersson G, Tandre K, Dahlqvist S, Söderkvist P, Rönnblom L, Hulting A, Wahlberg J, Ekwall O, Dahlqvist P, Meadows J, Bensing S, Lindblad-Toh K, Kämpe O, Pielberg G - Extended exome sequencing identifies BACH2 as a novel major risk locus for Addison's disease, Journal of Internal Medicine, (2016), 280, 6, 595-608

Bogdanovic G, Pou C, Barrientos-Somarribas M, Bjerkner A, Honkaniemi E, Allander T, Andersson B, Gustafsson B - Virome characterisation from Guthrie cards in children who later developed acute lymphoblastic leukaemia, British Journal of Cancer, (2016), 115, 8, 1008-1014

Bolin S, Borgenvik A, Persson C, Rosén G, Sundström A, Qi J, Bradner J, Weiss W, Cho Y, Weishaupt H, Swartling F - Abstract 2473: Combined BET-bromodomain and CDK2 inhibition in MYC-driven medulloblastoma, Cancer Research, (2016), 76, 14 Supplement, 2473-2473

Bonfiglio F, Hysi P, Ek W, Karhunen V, Rivera N, Männikkö M, Nordenstedt H, Zucchelli M, Bresso F, Williams F, Tornblom H, Magnusson P, Pedersen N, Ronkainen J, Schmidt P, D'Amato M - A meta-analysis of reflux genome-wide association studies in 6750 Northern Europeans from the general population, Neurogastroenterology & Motility, (2016), -, -, -

Brindefalk B, Ekman M, Ininbergs K, Dupont C, Yooseph S, Pinhassi J, Bergman B - Distribution and expression of microbial rhodopsins in the Baltic Sea and adjacent waters, Environmental Microbiology, (2016), -, -, -

Buck M, Nilsson L, Brunius C, Dabiré R, Hopkins R, Terenius O - Bacterial associations reveal spatial population dynamics in Anopheles gambiae mosquitoes, Scientific Reports, (2016), 6, -, 22806

Bunse C, Bertos-Fortis M, Sassenhagen I, Sildever S, Sjöqvist C, Godhe A, Gross S, Kremp A, Lips I, Lundholm N, Rengefors K, Sefbom J, Pinhassi J, Legrand C - Spatio-Temporal Interdependence of Bacteria and Phytoplankton during a Baltic Sea Spring Bloom, Frontiers in Microbiology, (2016), 7, -, -

Cancer M, Weishaupt H, Rosen G, Bunikis I, Jiang Y, Sreedharan S, Bolin S, Gyllensten U, Becher O, Uhrbom L, Ameur A, Swartling F - Abstract 2688: A forward genetics screen of murine brain tumors identifies novel candidate genes involved in gliomagenesis, Cancer Research, (2016), 76, 14 Supplement, 2688-2688

Cannon J, Vellutini B, Smith J, Ronquist F, Jondelius U, Hejnol A - Xenacoelomorpha is the sister group to Nephrozoa, Nature, (2016), 530, 7588, 89-93

Caruso V, Sreedharan S, Carlini V, Jacobsson J, Haitina T, Hammer J, Stephansson O, Crona F, Sommer W, Risérus U, Lannfelt L, Marcus C, Heilig M, de Barioglio S, Fredriksson R, Schiöth H - mRNA GPR162 changes are associated with decreased food intake in rat, and its human genetic variants with impairments in glucose homeostasis in two Swedish cohorts, Gene, (2016), 581, 2, 139-145

Caspeta L, Chen Y, Nielsen J - Thermotolerant yeasts selected by adaptive evolution express heat stress response at 30 °C, Scientific Reports, (2016), 6, -, 27003

Cavalli M, Pan G, Nord H, Eriksson N, Wadelius C, Wadelius M - Novel regulatory variant detected on the VKORC1 haplotype that is associated with warfarin dose, Pharmacogenomics, (2016), 17, 12, 1305-1314

Cavalli M, Pan G, Nord H, Wallerman O, Wallén Arzt E, Berggren O, Elvers I, Eloranta M, Rönnblom L, Lindblad Toh K, Wadelius C - Allele-specific transcription factor binding to common and rare variants associated with disease and gene expression, Human Genetics, (2016), 135, 5, 485-497

Cavalli M, Pan G, Nord H, Wallén Arzt E, Wallerman O, Wadelius C - Allele-specific transcription factor binding in liver and cervix cells unveils many likely drivers of GWAS signals, Genomics, (2016), 107, 6, 248-254

Celepli N, Sundh J, Ekman M, Dupont C, Yooseph S, Bergman B, Ininbergs K - Meta-omic analyses of Baltic Sea cyanobacteria: Diversity, community structure and salt acclimation, Environmental Microbiology, (2016), -, -, -

Celorio-Mancera M, Wheat C, Huss M, Vezzi F, Neethiraj R, Reimegård J, Nylin S, Janz N - Evolutionary history of host use, rather than plant phylogeny, determines gene expression in a generalist butterfly, BMC Evolutionary Biology, (2016), 16, 1, -

Chen D, Enroth S, Liu H, Sun Y, Wang H, Yu M, Deng L, Xu S, Gyllensten U - Pooled analysis of genome-wide association studies of cervical intraepithelial neoplasia 3 (CIN3) identifies a new susceptibility locus, Oncotarget, (2016), -, -, -

Chen M, Zhao H, Lind S, Pettersson U - Data on the expression of cellular lncRNAs in human adenovirus infected cells, Data in Brief, (2016), 8, -, 1263-1279

Cheng Y, Stanne T, Giese A, Ho W, Traylor M, Amouyel P, Holliday E, Malik R, Xu H, Kittner S, Cole J, O’Connell J, Danesh J, Rasheed A, Zhao W, Engelter S, Grond-Ginsbach C, Kamatani Y, Lathrop M, Leys D, Thijs V, Metso T, Tatlisumak T, Pezzini A, Parati E, Norrving B, Bevan S, Rothwell P, Sudlow C, Slowik A, Lindgren A, Walters M, Jannes J, Shen J, Crosslin D, Doheny K, Laurie C, Kanse S, Bis J, Fornage M, Mosley T, Hopewell J, Strauch K, Müller-Nurasyid M, Gieger C, Waldenberger M, Peters A, Meisinger C, Ikram M, Meschia J, Seshadri S, Sharma P, Worrall B, Jern C, Levi C, Dichgans M, Boncoraglio G, Markus H, Debette S, Rolfs A, Saleheen D, Mitchell B - Genome-Wide Association Analysis of Young-Onset Stroke Identifies a Locus on Chromosome 10q25 NearHABP2, Stroke, (2016), 47, 2, 307-316

Choi S, Ruggiero D, Sorice R, Song C, Nutile T, Vernon Smith A, Concas M, Traglia M, Barbieri C, Ndiaye N, Stathopoulou M, Lagou V, Maestrale G, Sala C, Debette S, Kovacs P, Lind L, Lamont J, Fitzgerald P, Tönjes A, Gudnason V, Toniolo D, Pirastu M, Bellenguez C, Vasan R, Ingelsson E, Leutenegger A, Johnson A, DeStefano A, Visvikis-Siest S, Seshadri S, Ciullo M - Six Novel Loci Associated with Circulating VEGF Levels Identified by a Meta-analysis of Genome-Wide Association Studies, PLOS Genetics, (2016), 12, 2, e1005874

Christel S, Fridlund J, Buetti-Dinh A, Buck M, Watkin E, Dopson M - RNA transcript sequencing reveals inorganic sulfur compound oxidation pathways in the acidophile Acidithiobacillus ferrivorans, FEMS Microbiology Letters, (2016), 363, 7, fnw057

Christel S, Fridlund J, Watkin E, Dopson M - Acidithiobacillus ferrivorans SS3 presents little RNA transcript response related to cold stress during growth at 8 °C suggesting it is a eurypsychrophile, Extremophiles, (2016), 20, 6, 903-913

Chu A, Deng X, Fisher V, Drong A, Zhang Y, Feitosa M, Liu C, Weeks O, Choh A, Duan Q, Dyer T, Eicher J, Guo X, Kent J, Lange L, Liu X, Lohman K, Lu L, Mahajan A, O'Connell J, Parihar A, Peralta J, Zhang Y, Homuth G, Kissebah A, Kullberg J, Laqua R, Launer L, Nauck M, Olivier M, Peyser P, Terry J, Wojczynski M, Yao J, Bielak L, Blangero J, Borecki I, Bowden D, Czerwinski S, Ding J, Friedrich N, Gudnason V, Harris T, Ingelsson E, Johnson A, Kardia S, Langefeld C, Lind L, Liu Y, Mitchell B, Morris A, Mosley T, Rotter J, Shuldiner A, Towne B, Völzke H, Wallaschofski H, Wilson J, Allison M, Lindgren C, Cupples L, Steinhauser M, Fox C - Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyte development and differentiation, Nature Genetics, (2016), -, -, -

Cornelis M, Kacprowski T, Menni C, Gustafsson S, Pivin E, Adamski J, Artati A, Eap C, Ehret G, Friedrich N, Ganna A, Guessous I, Homuth G, Lind L, Magnusson P, Mangino M, Pedersen N, Pietzner M, Suhre K, Völzke H, Bochud M, Spector T, Grabe H, Ingelsson E - Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior, Human Molecular Genetics, (2016), -, -, ddw334

Dahlin A, Wibom C, Ghasimi S, Brännström T, Andersson U, Melin B - Relation between Established Glioma Risk Variants and DNA Methylation in the Tumor, PLOS ONE, (2016), 11, 10, e0163067

Das S, Pettersson B, Behra P, Ramesh M, Dasgupta S, Bhattacharya A, Kirsebom L - The Mycobacterium phlei genome: expectations and surprises, Genome Biology and Evolution, (2016), -, -, evw049

Del Gobbo L, Imamura F, Aslibekyan S, Marklund M, Virtanen J, Wennberg M, Yakoob M, Chiuve S, dela Cruz L, Frazier-Wood A, Fretts A, Guallar E, Matsumoto C, Prem K, Tanaka T, Wu J, Zhou X, Helmer C, Ingelsson E, Yuan J, Barberger-Gateau P, Campos H, Chaves P, Djoussé L, Giles G, Gómez-Aracena J, Hodge A, Hu F, Jansson J, Johansson I, Khaw K, Koh W, Lemaitre R, Lind L, Luben R, Rimm E, Risérus U, Samieri C, Franks P, Siscovick D, Stampfer M, Steffen L, Steffen B, Tsai M, van Dam R, Voutilainen S, Willett W, Woodward M, Mozaffarian D - ω-3 Polyunsaturated Fatty Acid Biomarkers and Coronary Heart Disease, JAMA Internal Medicine, (2016), 176, 8, 1155

Demirkan A, Lahti J, Direk N, Viktorin A, Lunetta K, Terracciano A, Nalls M, Tanaka T, Hek K, Fornage M, Wellmann J, Cornelis M, Ollila H, Yu L, Smith J, Pilling L, Isaacs A, Palotie A, Zhuang W, Zonderman A, Faul J, Sutin A, Meirelles O, Mulas A, Hofman A, Uitterlinden A, Rivadeneira F, Perola M, Zhao W, Salomaa V, Yaffe K, Luik A, Liu Y, Ding J, Lichtenstein P, Landén M, Widen E, Weir D, Llewellyn D, Murray A, Kardia S, Eriksson J, Koenen K, Magnusson P, Ferrucci L, Mosley T, Cucca F, Oostra B, Bennett D, Paunio T, Berger K, Harris T, Pedersen N, Murabito J, Tiemeier H, van Duijn C, Räikkönen K - Somatic, positive and negative domains of the Center for Epidemiological Studies Depression (CES-D) scale: a meta-analysis of genome-wide association studies, Psychological Medicine, (2016), 46, 08, 1613-1623

Djureinovic D, Hallström B, Horie M, Mattsson J, La Fleur L, Fagerberg L, Brunnström H, Lindskog C, Madjar K, Rahnenführer J, Ekman S, Ståhle E, Koyi H, Brandén E, Edlund K, Hengstler J, Lambe M, Saito A, Botling J, Pontén F, Uhlén M, Micke P - Profiling cancer testis antigens in non–small-cell lung cancer, JCI Insight, (2016), 1, 10, -

Dumanski J, Lambert J, Rasi C, Giedraitis V, Davies H, Grenier-Boley B, Lindgren C, Campion D, Dufouil C, Pasquier F, Amouyel P, Lannfelt L, Ingelsson M, Kilander L, Lind L, Forsberg L - Mosaic Loss of Chromosome Y in Blood Is Associated with Alzheimer Disease, The American Journal of Human Genetics, (2016), 98, 6, 1208-1219

Dutoit L, Burri R, Nater A, Ellegren H - Genomic distribution and estimation of nucleotide diversity in natural populations: perspectives from the collared flycatcher (Ficedula albicollis) genome, Molecular Ecology Resources, (2016), -, -, -

Edsgärd D, Iglesias M, Reilly S, Hamsten A, Tornvall P, Odeberg J, Emanuelsson O - GeneiASE: Detection of condition-dependent and static allele-specific expression from RNA-seq data without haplotype information, Scientific Reports, (2016), 6, -, 21134

Einarsdottir E, Hafrén L, Leinonen E, Bhutta M, Kentala E, Kere J, Mattila P - Genome-wide association analysis reveals variants on chromosome 19 that contribute to childhood risk of chronic otitis media with effusion, Scientific Reports, (2016), 6, -, 33240

Einarsson E, Troell K, Hoeppner M, Grabherr M, Ribacke U, Svärd S - Coordinated Changes in Gene Expression Throughout Encystation of Giardia intestinalis, PLOS Neglected Tropical Diseases, (2016), 10, 3, e0004571

Ek W, Hedman Å, Enroth S, Morris A, Lindgren C, Mahajan A, Gustafsson S, Gyllensten U, Lind L, Johansson Å - Genome-wide DNA methylation study identifies genes associated with the cardiovascular biomarker GDF-15, Human Molecular Genetics, (2016), 25, 4, 817-827

Enderle R, Berlin A, Stenlid J - Analyses of the ash dieback pathogen,Hymenoscyphus fraxineus, suggest role of tree species diversity on colonization and population structure differentiation, Forest Pathology, (2016), 46, 1, 82-84

Engström K, Wojdacz T, Marabita F, Ewels P, Käller M, Vezzi F, Prezza N, Gruselius J, Vahter M, Broberg K - Transcriptomics and methylomics of CD4-positive T cells in arsenic-exposed women, Archives of Toxicology, (2016), -, -, -

Eriksson N, Wallentin L, Berglund L, Axelsson T, Connolly S, Eikelboom J, Ezekowitz M, Oldgren J, Paré G, Reilly P, Siegbahn A, Syvanen A, Wadelius C, Yusuf S, Wadelius M - Genetic determinants of warfarin maintenance dose and time in therapeutic treatment range: a RE-LY genomics substudy, Pharmacogenomics, (2016), 17, 13, 1425-1439

Ewels P, Magnusson M, Lundin S, Käller M - MultiQC: summarize analysis results for multiple tools and samples in a single report, Bioinformatics, (2016), 32, 19, 3047-3048

Fall T, Salihovic S, Brandmaier S, Nowak C, Ganna A, Gustafsson S, Broeckling C, Prenni J, Kastenmüller G, Peters A, Magnusson P, Wang-Sattler R, Giedraitis V, Berne C, Gieger C, Pedersen N, Ingelsson E, Lind L - Non-targeted metabolomics combined with genetic analyses identifies bile acid synthesis and phospholipid metabolism as being associated with incident type 2 diabetes, Diabetologia, (2016), 59, 10, 2114-2124

Fan G, Pettersson M, Zhang H, Dainat J, Ekman D, Höppner M, Jern P, Nystedt B, Liu X, Chen W, Liang X, Shi C, Fu Y, Ma K, Zhan X, Feng C, Gustafson U, Rubin C, Sällman Almén M, Blass M, Casini M, Folkvord A, Laikre L, Ryman N, Ming-Yuen Lee S, Xu X - The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing, eLife, (2016), 5, -, -

Ferreira P, Oti M, Barann M, Wieland T, Ezquina S, Friedländer M, Rivas M, Esteve-Codina A, Estivill X, Guigó R, Dermitzakis E, Antonarakis S, Meitinger T, Strom T, Palotie A, François Deleuze J, Sudbrak R, Lerach H, Gut I, Syvänen A, Gyllensten U, Schreiber S, Rosenstiel P, Brunner H, Veltman J, Hoen P, Jan van Ommen G, Carracedo A, Brazma A, Flicek P, Cambon-Thomsen A, Mangion J, Bentley D, Hamosh A, Rosenstiel P, Strom T, Lappalainen T, Guigó R, Sammeth M - Sequence variation between 462 human individuals fine-tunes functional sites of RNA processing, Scientific Reports, (2016), 6, -, 32406

Ferreira T, Chasman D, Schmidt E, Johnson T, Thorleifsson G, Luan J, Donnelly L, Kanoni S, Petersen A, Pihur V, Shungin D, Hughes M, Meirelles O, Kaakinen M, Bouatia-Naji N, Kristiansson K, Shah S, Guo X, Lyytikäinen L, Eriksson N, Magnusson P, Salfati E, Rallidis L, Smith A, Folkersen L, Witkowska K, Pers T, Joehanes R, Kim S, Lataniotis L, Johnson A, Warren H, Kim Y, Wu Y, Tayo B, Bochud M, Absher D, Adair L, Amin N, Arking D, Axelsson T, Balkau B, Bandinelli S, Barroso I, Bevan S, Bis J, Bjornsdottir G, Boehnke M, Boerwinkle E, Bonnycastle L, Boomsma D, Bornstein S, Brown M, Burnier M, Cabrera C, Chambers J, Chang I, Cheng C, Chines P, Chung R, Collins F, Connell J, Döring A, Dallongeville J, Danesh J, de Faire U, Delgado G, Doney A, Drenos F, Edkins S, Eicher J, Elosua R, Erdmann J, Eriksson P, Esko T, Evans A, Farrall M, Felix J, Ferrières J, Ferrucci L, Fornage M, Forrester T, Franceschini N, Franco O, Franco-Cereceda A, Fraser R, Ganesh S, Gao H, Gertow K, Gigante B, Giulianini F, Goel A, Goodall A, Goodarzi M, Gorski M, Gräßler J, Groves C, Gudnason V, Gyllensten U, Hallmans G, Hartikainen A, Hassinen M, Havulinna A, Hayward C, Hercberg S, Herzig K, Hingorani A, Hirschhorn J, Hofman A, Holmen J, Holmen O, Hottenga J, Howard P, Hsiung C, Hunt S, Ikram M, Illig T, Iribarren C, Jensen R, Kähönen M, Kang H, Kathiresan S, Keating B, Khaw K, Kim Y, Kim E, Klopp N, Kolovou G, Komulainen P, Kooner J, Kosova G, Krauss R, Kuh D, Kuusisto J, Kvaløy K, Lakka T, Lee N, Lee I, Lee W, Levy D, Liang K, Lin H, Lin L, Lindström J, Lobbens S, Männistö S, Müller G, Müller-Nurasyid M, Mach F, Markus H, Marouli E, McCarthy M, McKenzie C, Meneton P, Menni C, Metspalu A, Mijatovic V, Moilanen L, Montasser M, Morris A, Morrison A, Mulas A, Nagaraja R, Narisu N, Nikus K, O'Donnell C, Ong K, Paccaud F, Palmer C, Parsa A, Pedersen N, Penninx B, Perola M, Peters A, Poulter N, Pramstaller P, Psaty B, Quertermous T, Rao D, Rasheed A, Rayner N, Renström F, Rettig R, Rice K, Roberts R, Rose L, Rossouw J, Samani N, Saramies J, Schunkert H, Sebert S, Sheu W, Shin Y, Sim X, Smit J, Sosa M, Spector T, Stančáková A, Stringham H, Sundstrom J, Swift A, Syvänen A, Tai E, Tanaka T, Thorsteinsdottir U, Tobin M, Tremoli E, Uitterlinden A, Uusitupa M, Vaidya D, van Duijn C, van Iperen E, Vasan R, Verwoert G, Virtamo J, Vitart V, Voight B, Vollenweider P, Wagner A, Wareham N, Watkins H, Weder A, Wilks R, Wilsgaard T, Wilson J, Wong T, Yang T, Yao J, Yengo L, Zhang W, Zhao J, Zhu X, Cooper R, Mohlke K, Saleheen D, Gierman H, Hovingh G, Taylor K, Dedoussis G, Sever P, Wong A, Lind L, Assimes T, Njølstad I, Schwarz P, Langenberg C, Snieder H, Caulfield M, Melander O, Laakso M, Saltevo J, Rauramaa R, Tuomilehto J, Ingelsson E, Lehtimäki T, Hveem K, Palmas W, März W, Kumari M, Salomaa V, Chen Y, Rotter J, Froguel P, Jarvelin M, Lakatta E, Franks P, Hamsten A, Wichmann H, Palmer C, Stefansson K, Ridker P, Loos R, Chakravarti A, Morris A, Newton-Cheh C, Munroe P - The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals, Nature Genetics, (2016), 48, 10, 1171-1184

Franke B, Stein J, Ripke S, Anttila V, Hibar D, van Hulzen K, Arias-Vasquez A, Smoller J, Nichols T, Neale M, McIntosh A, Lee P, McMahon F, Meyer-Lindenberg A, Mattheisen M, Andreassen O, Gruber O, Sachdev P, Roiz-Santiañez R, Saykin A, Ehrlich S, Mather K, Turner J, Schwarz E, Thalamuthu A, Yao Y, Ho Y, Martin N, Wright M, Ripke S, Neale B, Corvin A, Walters J, Farh K, Holmans P, Lee P, Bulik-Sullivan B, Collier D, Huang H, Pers T, Agartz I, Agerbo E, Albus M, Alexander M, Amin F, Bacanu S, Begemann M, Belliveau R, Bene J, Bergen S, Bevilacqua E, Bigdeli T, Black D, Bruggeman R, Buccola N, Buckner R, Byerley W, Cahn W, Cai G, Cairns M, Campion D, Cantor R, Carr V, Carrera N, Catts S, Chambert K, Chan R, Chen E, Chen R, Cheng W, Cheung E, Chong S, Cloninger C, Cohen D, Cohen N, Cormican P, Craddock N, Crespo-Facorro B, Crowley J, Curtis D, Davidson M, Davis K, Degenhardt F, Del Favero J, DeLisi L, Demontis D, Dikeos D, Dinan T, Djurovic S, Donohoe G, Drapeau E, Duan J, Dudbridge F, Eichhammer P, Eriksson J, Escott-Price V, Essioux L, Fanous A, Farrell M, Frank J, Franke L, Freedman R, Freimer N, Friedman J, Fromer M, Genovese G, Georgieva L, Gershon E, Giegling I, Giusti-Rodríguez P, Godard S, Goldstein J, Gopal S, Gratten J, de Haan L, Hammer C, Hamshere M, Hansen M, Hansen T, Haroutunian V, Hartmann A, Henskens F, Herms S, Hirschhorn J, Hoffmann P, Hofman A, Hollegaard M, Hougaard D, Ikeda M, Joa I, Julià A, Kähler A, Kahn R, Kalaydjieva L, Karachanak-Yankova S, Karjalainen J, Kavanagh D, Keller M, Kelly B, Kennedy J, Khrunin A, Kim Y, Klovins J, Knowles J, Konte B, Kucinskas V, Kucinskiene Z, Kuzelova-Ptackova H, Laurent C, Lee S, Keong J, Legge S, Lerer B, Li M, Li T, Liang K, Lieberman J, Limborska S, Lönnqvist J, Loughland C, Lubinski J, Macek M, Magnusson P, Maher B, Maier W, Mallet J, Marsal S, Mattheisen M, Mattingsdal M, McCarley R, McDonald C, McIntosh A, Meier S, Meijer C, Melegh B, Melle I, Mesholam-Gately R, Metspalu A, Michie P, Milani L, Milanova V, Mokrab Y, Morris D, Mors O, Müller-Myhsok B, Murphy K, Murray R, Myin-Germeys I, Nelis M, Nenadic I, Nertney D, Nestadt G, Nicodemus K, Nikitina-Zake L, Nisenbaum L, Nordin A, O'Callaghan E, O'Dushlaine C, O'Neill F, Oh S, Olincy A, Olsen L, Van Os J, Pantelis C, Papadimitriou G, Papiol S, Parkhomenko E, Pato M, Paunio T, Perkins D, Pietiläinen O, Pimm J, Pocklington A, Powell J, Price A, Pulver A, Purcell S, Quested D, Rasmussen H, Reichenberg A, Reimers M, Richards A, Roffman J, Roussos P, Ruderfer D, Salomaa V, Sanders A, Schall U, Schubert C, Schulze T, Schwab S, Scolnick E, Scott R, Seidman L, Shi J, Silverman J, Sim K, Slominsky P, Smoller J, So H, Söderman E, Spencer C, Stahl E, Stogmann E, Straub R, Strengman E, Strohmaier J, Stroup T, Subramaniam M, Suvisaari J, Svrakic D, Szatkiewicz J, Thirumalai S, Toncheva D, Tooney P, Veijola J, Waddington J, Walsh D, Wang D, Wang Q, Webb B, Weiser M, Wildenauer D, Williams N, Williams S, Witt S, Wolen A, Wong E, Wormley B, Wu J, Xi H, 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Das S, Pettersson BMF, Behra PRK, Ramesh M, Dasgupta S, Bhattacharya A, Kirsebom LA - Characterization of Three Mycobacterium spp. with Potential Use in Bioremediation by Genome Sequencing and Comparative Genomics, Genome Biol Evol, (2015), 7, 7, 1871-1886

Delgado Verdugo A, Crona J, Maharjan R, Hellman P, Westin G, Björklund P - Exome Sequencing and CNV Analysis on Chromosome 18 in Small Intestinal Neuroendocrine Tumors: Ruling Out a Suspect?, Horm Metab Res, (2015), 47, 6, 452-455

Delhomme N, Sundström G, Zamani N, Lantz H, Lin YC, Hvidsten TR, Höppner MP, Jern P, Van de Peer Y, ..., Street NR - Serendipitous Meta-Transcriptomics: The Fungal Community of Norway Spruce (Picea abies)., Plos One, (2015), 10, 9, e0139080

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Douglas GM, Gos G, Steige KA, Salcedo A, Holm K, Josephs EB, Arunkumar R, Ågren JA, Hazzouri KM, Wang W, Platts AE, Williamson RJ, Neuffer B, Lascoux M, Slotte T, Wright SI - Hybrid origins and the earliest stages of diploidization in the highly successful recent polyploid Capsella bursa-pastoris, Proc Natl Acad Sci U S A, (2015), 112, 9, 2806-2811

Dumanski JP, Rasi C, Lönn M, Davies H, Ingelsson M, Giedraitis V, Lannfelt L, Magnusson PKE, Lindgren CM, Morris AP, Cesarini D, Johannesson M, Tiensuu Janson E, Lind L, Pedersen NL, Ingelsson E, Forsberg LA - Smoking is associated with mosaic loss of chromosome Y, Science, (2015), 347, 6217, 81-83

Einarsson E, Svärd SG, Troell K - UV irradiation responses in Giardia intestinalis, Exp Parasitol, (2015), 154, , 25-32

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Enroth S, Bosdotter Enroth S, Johansson Å, Gyllensten U - Effect of genetic and environmental factors on protein biomarkers for common non-communicable disease and use of personally normalized plasma protein profiles (PNPPP), Biomarkers, (2015), 20, 6-7, 355-364

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Fall T, Xie W, Poon W, Yaghootkar H, Mägi R, the GENESIS consortium, Knowles JW, Lyssenko V, Weedon M, Frayling TM, Ingelsson E - Using genetic variants to assess the relationship between circulating lipids and type 2 diabetes, Diabetes, (2015), 64, 7, 2676-2684

Flach CF, Johnning A, Nilsson I, Smalla K, Kristiansson E, Larsson DG - Isolation of novel IncA/C and IncN fluoroquinolone resistance plasmids from an antibiotic-polluted lake., The Journal Of Antimicrobial Chemotherapy, (2015), 70, 10, 2709-2717

Fogelqvist J, Verkhozina A, Katyshev A, Pucholt P, Dixelius C, Ronnberg-Wastljung A, Lascoux M, Berlin S - Genetic and morphological evidence for introgression between three species of willows, BMC Evol Biol, (2015), 15, 1, 193

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Grauers A, Wang J, Einarsdottir E, Simony A, Danielsson A, Åkesson K, Ohlin A, Halldin K, Grabowski P, ..., Gerdhem P - Candidate gene analysis and exome sequencing confirm LBX1 as a susceptibility gene for idiopathic scoliosis., The Spine Journal : Official Journal Of The North American Spine Society, (2015), 15, 10, 2239-2246

Grunewald J, Kaiser Y, Ostadkarampour M, Rivera NV, Vezzi F, Lötstedt B, Olsen RA, Sylwan L, Lundin S, ..., Eklund A - T-cell receptor-HLA-DRB1 associations suggest specific antigens in pulmonary sarcoidosis., The European Respiratory Journal, (2015), 47, 1, -

Gréen H, Hasmats J, Kupershmidt I, Edsgärd D, de Petris L, Lewensohn R, Blackhall F, Vikingsson S, Besse B, ..., Lundeberg J - Using Whole-Exome Sequencing to Identify Genetic Markers for Carboplatin and Gemcitabine-Induced Toxicities., Clinical Cancer Research : An Official Journal Of The American Association For Cancer Research, (2015), -, -, -

Günther T, Valdiosera C, Malmström H, Ureña I, Rodriguez-Varela R, Sverrisdóttir ÓO, Daskalaki EA, Skoglund P, Naidoo T, Svensson EM, Bermúdez de Castro JM, Carbonell E, Dunn M, Storå J, Iriarte E, Arsuaga JL, Carretero J-M, Götherström A, Jakobsson M - Ancient genomes link early farmers from Atapuerca in Spain to modern-day Basques, Proc Natl Acad Sci U S A, (2015), 112, 38, 11917-11922

Habuka M, Fagerberg L, Hallström BM, Pontén F, Yamamoto T, Uhlen M. - The Urinary Bladder Transcriptome and Proteome Defined by Transcriptomics and Antibody-Based Profiling., PLoS One, (2015), 10, 12, -

Haj Hensvold A, Magnusson PKE, Joshua V, Hansson M, Israelsson L, Ferreira R, Jakobsson P-J, Holmdahl R, Hammarström L, Malmström V, Askling J, Klareskog L, Catrina AI - Environmental and genetic factors in the development of anticitrullinated protein antibodies (ACPAs) and ACPA-positive rheumatoid arthritis: an epidemiological investigation in twins, Ann Rheum Dis, (2015), 74, 2, 375-380

Hammarsjö A, Nordgren A, Lagerstedt-Robinson K, Malmgren H, Nilsson D, Wedrén S, Nordenskjöld M, Nishimura G, Grigelioniene G - Pathogenenic variant in the COL2A1 gene is associated with Spondyloepiphyseal dysplasia type Stanescu., American Journal Of Medical Genetics Part A, (2015), -, -, -

Hellström-Lindahl E, Danielsson A, Ponten F, Czernichow P, Korsgren O, Johansson L, Eriksson O - GPR44 is a pancreatic protein restricted to the human beta cell, Acta Diabetol., (2015), [Epub ahead of print], 2015, 2.399

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Hofmeister W, Nilsson D, Topa A, Anderlid BM, Darki F, Matsson H, Tapia Páez I, Klingberg T, Samuelsson L, ..., Lindstrand A - CTNND2-a candidate gene for reading problems and mild intellectual disability., Journal Of Medical Genetics, (2015), 52, 2, 111-122

Horikoshi M, Mӓgi R, van de Bunt M, Surakka I, Sarin A-P, Mahajan A, Marullo L, Thorleifsson G, Hӓgg S, Hottenga J-J, Ladenvall C, Ried JS, Winkler TW, Willems SM, Pervjakova N, Esko T, Beekman M, Nelson CP, Willenborg C, Wiltshire S, Ferreira T, Fernandez J, Gaulton KJ, Steinthorsdottir V, Hamsten A, Magnusson PKE, Willemsen G, Milaneschi Y, Robertson NR, Groves CJ, Bennett AJ, Lehtimӓki T, Viikari JS, Rung J, Lyssenko V, Perola M, Heid IM, Herder C, Grallert H, Müller-Nurasyid M, Roden M, Hypponen E, Isaacs A, van Leeuwen EM, Karssen LC, Mihailov E, Houwing-Duistermaat JJ, de Craen AJM, Deelen J, Havulinna AS, Blades M, Hengstenberg C, Erdmann J, Schunkert H, Kaprio J, Tobin MD, Samani NJ, Lind L, Salomaa V, Lindgren CM, Slagboom PE, Metspalu A, van Duijn CM, Eriksson JG, Peters A, Gieger C, Jula A, Groop L, Raitakari OT, Power C, Penninx BWJH, de Geus E, Smit JH, Boomsma DI, Pedersen NL, Ingelsson E, Thorsteinsdottir U, Stefansson K, Ripatti S, Prokopenko I, McCarthy MI, Morris AP, Engage Consortium - Discovery and Fine-Mapping of Glycaemic and Obesity-Related Trait Loci Using High-Density Imputation, PLoS Genet, (2015), 11, 7, e1005230

Hou C, Wikström N, Rydin C. - The chloroplast genome of Ephedra foeminea (Ephedraceae, Gnetales), an entomophilous gymnosperm endemic to the Mediterranean area., Mitochondrial DNA, (2015), [Epub ahead of print], 2015, 1.209

Huang J, Löhr JM, Nilsson M, Segersvärd R, Matsson H, Verbeke C, Heuchel R, Kere J, Iafrate AJ, ..., Ye W - Variant Profiling of Candidate Genes in Pancreatic Ductal Adenocarcinoma., Clinical Chemistry, (2015), 61, 11, 1408-1416

Huang M, Bai Y, Sjostrom SL, Hallström BM, Liu Z, Petranovic D, Uhlén M, Joensson HN, Andersson-Svahn H, Nielsen J - Microfluidic screening and whole-genome sequencing identifies mutations associated with improved protein secretion by yeast., Proceedings Of The National Academy Of Sciences Of The United States Of America, (2015), 112, 34, E4689-E4696

Huffman JE, de Vries PS, Morrison AC, Sabater-Lleal M, Kacprowski T, Auer PL, Brody JA, Chasman DI, Chen M-H, Guo X, Lin L-A, Marioni RE, Müller-Nurasyid M, Yanek LR, Pankratz N, Grove ML, de Maat MPM, Cushman M, Wiggins KL, Qi L, Sennblad B, Harris SE, Polasek O, Riess H, Rivadeneira F, Rose LM, Goel A, Taylor KD, Teumer A, Uitterlinden AG, Vaidya D, Yao J, Tang W, Levy D, Waldenberger M, Becker DM, Folsom AR, Giulianini F, Greinacher A, Hofman A, Huang C-C, Kooperberg C, Silveira A, Starr JM, Strauch K, Strawbridge RJ, Wright AF, McKnight B, Franco OH, Zakai N, Mathias RA, Psaty BM, Ridker PM, Tofler GH, Völker U, Watkins H, Fornage M, Hamsten A, Deary IJ, Boerwinkle E, Koenig W, Rotter JI, Hayward C, Dehghan A, Reiner AP, O’Donnell CJ, Smith NL - Rare and low-frequency variants and their association with plasma levels of fibrinogen, FVII, FVIII, and vWF, Blood, (2015), 126, 11, e19-e29

Hugerth LW, Larsson J, Alneberg J, Lindh MV, Legrand C, Pinhassi J, Andersson AF. - Metagenome-assembled genomes uncover a global brackish microbiome., Genome Biol., (2015), 16, 279, -

Humble E, Martinez-Barrio A, Forcada J, Trathan PN, Thorne MAS, Hoffmann M, Wolf JBW, Hoffman JI - A draft fur seal genome provides insights into factors affecting SNP validation and how to mitigate them, Mol Ecol Resour, (2015), [Epub ahead of print], , 

Hägg S, Fall T, Ploner A, Mägi R, Fischer K, Draisma HH, Kals M, de Vries PS, Dehghan A, Willems SM, Sarin A-P, Kristiansson K, Nuotio M-L, Havulinna AS, de Bruijn RF, Ikram MA, Kuningas M, Stricker BH, Franco OH, Benyamin B, Gieger C, Hall AS, Huikari V, Jula A, Järvelin M-R, Kaakinen M, Kaprio J, Kobl M, Mangino M, Nelson CP, Palotie A, Samani NJ, Spector TD, Strachan DP, Tobin MD, Whitfield JB, Uitterlinden AG, Salomaa V, Syvänen A-C, Kuulasmaa K, Magnusson PK, Esko T, Hofman A, de Geus EJ, Lind L, Giedraitis V, Perola M, Evans A, Ferrières J, Virtamo J, Kee F, Tregouet D-A, Arveiler D, Amouyel P, Gianfagna F, Brambilla P, Ripatti S, van Duijn CM, Metspalu A, Prokopenko I, McCarthy MI, Pedersen NL, Ingelsson E, European Network for Genetic, Genomic Epidemiology (ENGAGE) consortium - Adiposity as a cause of cardiovascular disease: a Mendelian randomization study, Int J Epidemiol, (2015), 44, 2, 578-586

Hägg S, Ganna A, Van Der Laan SW, Esko T, Pers TH, Locke AE, Berndt SI, Justice AE, Kahali B, Siemelink MA, Pasterkamp G, Consortium tG, Strachan DP, Speliotes EK, North KE, Loos RJF, Hirschhorn JN, Pawitan Y, Ingelsson E - Gene-based meta-analysis of genome-wide association studies implicates new loci involved in obesity, Hum Mol Genet, (2015), 24, 23, 6849-6860

Imsland F, McGowan K, Rubin C-J, Henegar C, Sundstrom E, Berglund J, Schwochow D, Gustafson U, Imsland P, Lindblad-Toh K, Lindgren G, Mikko S, Millon L, Wade C, Schubert M, Orlando L, Penedo MCT, Barsh GS, Andersson L - Regulatory mutations in TBX3 disrupt asymmetric hair pigmentation that underlies Dun camouflage color in horses, Nat Genet, (2015), [Epub ahead of print], , 

Ininbergs K, Bergman B, Larsson J, Ekman M - Microbial metagenomics in the Baltic Sea: Recent advancements and prospects for environmental monitoring., Ambio, (2015), 44 Suppl 3, , 439-450

Isaksson J, Allen M, Nilsson KW, Lindblad F - Polymorphisms in the FK506 binding protein 5 gene are associated with attention deficit hyperactivity disorder and diurnal cortisol levels, Acta Paediatr, (2015), 104, 9, 910-915

Jahan SN, Åsman AK, Corcoran P, Fogelqvist J, Vetukuri RR, Dixelius C - Plant-mediated gene silencing restricts growth of the potato late blight pathogen Phytophthora infestans., Journal Of Experimental Botany, (2015), 66, 9, 2785-2794

Jakobsson HE, Rodríguez-Piñeiro AM, Schütte A, Ermund A, Boysen P, Bemark M, Sommer F, Bäckhed F, Hansson GC, Johansson ME - The composition of the gut microbiota shapes the colon mucus barrier., Embo Reports, (2015), 16, 2, 164-177

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Mushtaq M, Manzoor S, Pringle M, Rosander A, Bongcam-Rudloff E - Draft genome sequence of ‘Treponema phagedenis’ strain V1, isolated from bovine digital dermatitis, Stand Genomic Sci, (2015), 10, , 67

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